35 research outputs found

    Differential expression of alternatively spliced transcripts related to energy metabolism in colorectal cancer

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    On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism

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    Mitochondria are tightly linked to cellular nutrient sensing, and provide not only energy, but also intermediates for the de novo synthesis of cellular compounds including amino acids. Mitochondrial metabolic enzymes as generators and/or targets of signals are therefore important players in the distribution of intermediates between catabolic and anabolic pathways. The highly regulated 2-oxoglutarate dehydrogenase complex (OGDHC) participates in glucose oxidation via the tricarboxylic acid cycle. It occupies an amphibolic branch point in the cycle, where the energy-producing reaction of the 2-oxoglutarate degradation competes with glutamate (Glu) synthesis via nitrogen incorporation into 2-oxoglutarate. To characterize the specific impact of the OGDHC inhibition on amino acid metabolism in both plant and animal mitochondria, a synthetic analog of 2-oxoglutarate, namely succinyl phosphonate (SP), was applied to living systems from different kingdoms, both in situ and in vivo. Using a high-throughput mass spectrometry-based approach, we showed that organisms possessing OGDHC respond to SP by significantly changing their amino acid pools. By contrast, cyanobacteria which lack OGDHC do not show perturbations in amino acids following SP treatment. Increases in Glu, 4-aminobutyrate and alanine represent the most universal change accompanying the 2-oxoglutarate accumulation upon OGDHC inhibition. Other amino acids were affected in a species-specific manner, suggesting specific metabolic rearrangements and substrate availability mediating secondary changes. Strong perturbation in the relative abundance of amino acids due to the OGDHC inhibition was accompanied by decreased protein content. Our results provide specific evidence of a considerable role of OGDHC in amino acid metabolism

    The RNA-binding protein HuR is essential for the B cell antibody response

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    Post-transcriptional regulation of mRNA by the RNA-binding protein HuR (encoded by Elavl1) is required in B cells for the germinal center reaction and for the production of class-switched antibodies in response to thymus-independent antigens. Transcriptome-wide examination of RNA isoforms and their abundance and translation in HuR-deficient B cells, together with direct measurements of HuR-RNA interactions, revealed that HuR-dependent splicing of mRNA affected hundreds of transcripts, including that encoding dihydrolipoamide S-succinyltransferase (Dlst), a subunit of the 2-oxoglutarate dehydrogenase (α-KGDH) complex. In the absence of HuR, defective mitochondrial metabolism resulted in large amounts of reactive oxygen species and B cell death. Our study shows how post-transcriptional processes control the balance of energy metabolism required for the proliferation and differentiation of B cells

    Effects of long-term oxygen treatment on <it>α</it>-ketoglutarate dehydrogenase activity and oxidative modifications in mitochondria of the guinea pig heart

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    <p>Abstract</p> <p>Objective</p> <p>Oxygen therapy is used for the treatment of various diseases, but prolonged exposure to high concentrations of O<sub>2 </sub>is also associated with formation of free radicals and oxidative damage.</p> <p>Methods</p> <p>In the present study we compared α-ketoglutarate dehydrogenase (KGDH) activity and mitochondrial oxidative damage in the hearts of guinea pigs after long-term (17 and 60 h) oxygenation with 100% normobaric O<sub>2 </sub>and with partially negatively (O<sub>2 neg</sub>) or positively (O<sub>2 posit</sub>) ionized oxygen.</p> <p>Results</p> <p>Inhalation of O<sub>2 </sub>led to significant loss in KGDH activity and thiol group content and accumulation of bityrosines. Inhalation of O<sub>2 neg </sub>was accompanied by more pronounced KGDH inhibition, possibly due to additional formation of protein-lipid conjugates. In contrast, O<sub>2 </sub>posit prevented loss in KGDH activity and diminished mitochondrial oxidative damage.</p> <p>Conclusions</p> <p>These findings suggest that oxygen treatment is associated with impairment of heart energy metabolism and support the view that inhalation of O<sub>2 posit </sub>optimizes the beneficial effects of oxygen therapy.</p
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